👤 Pablo Cáceres

Flavobacterium oreochromis has been associated with elevated mortality rates during the early stages of tambaqui (Colossoma macropomum) aquaculture. This study investigated genetic responses to bacterial infection in juvenile fish by comparing gene expression profiles between symptomatic (IS) and asymptomatic (IA) individuals. Skin samples from both IA and IS individuals were collected for transcriptome sequencing. Approximately 21 million reads per library were aligned to the tambaqui genome. Differential expression analysis revealed 2,176 upregulated and 1,219 downregulated genes in IS individuals, whereas 1,358 genes were upregulated and 488 downregulated in IA individuals. Notably, genes upregulated in both groups were associated with autophagy (e.g., atg4b and ulk2) and oxidative stress responses (e.g., klf9 and txnip). In contrast, genes related to tissue integrity, such as unc45b and akap6, were consistently downregulated during infection. These results suggest a dual host response to F. oreochromis infection, characterized by activation of cellular stress pathways and the suppression of genes involved in maintaining structural integrity. The upregulation of autophagy-related (atg4b, ulk2) and oxidative stress-regulating (klf9 and txnip) genes likely reflects an attempt by the host to counteract bacterial invasion through enhanced intracellular degradation and redox homeostasis. Conversely, the downregulation of unc45b and akap6 may indicate a compromise in structural defense mechanisms. These findings offer valuable insights into the immunogenetics of tambaqui and have direct implications for enhancing disease resistance in aquaculture. Moreover, they contribute to a better understanding of the complex interplay between molecular pathways involved in F. oreochromis infection. Show less

DUSP6/MKP3 is a dual-specific phosphatase that regulates extracellular regulated kinase ERK1/2 and ERK5 activity, with an increasingly recognized role as tumor suppressor. In silico studies from Gene expression Omnibus (GEO) and Cancer Genome atlas (TCGA) databases reveal poor prognosis in those Non-small cell lung cancer (NSCLC) patients with low expression levels of Show less

The objective of this study was the description of a valid genetic risk score (GRS) to predict individuals with high susceptibility to childhood overweight by their genetic profiles. Case-control study including a group of children with high-risk familial predisposition to morbid obesity. Birth cohort from general population constituted the validation sample. For the discovery sample, 218 children with non-syndromic obesity and 190 control individuals were included. The validation sample was 653 children from two birth cohorts belonging to the INMA (Infancia y Medio Ambiente [Environment and Childhood] )project. 109 SNPs located in the genes FTO, SEC16B, BDNF, ETV5, SH2B1, GNPDA2, LYPLAL1, MSRA, TFAP2, KCTD15, MTCH2 and NEGR1, previously reported in association to body mass index (BMI) were analysed. For the validation sample, association between genome-wide data and BMI measurements between 3.5 and 5 years of age, were evaluated. The GRS includes six SNPs in the genes FTO, TFAP2B, SEC16B, ETV5 and SH2B1. The score distribution differs among cases and controls (P = 9.2 × 10(-14) ) showing a significant linear association with obesity (odds ratio [OR] per allele = 1.69; confidence interval [CI] 95% = 1.46-1.97; P = 4.3 × 10(-1) and area under the receiver operating characteristic curve [AUC] = 0.727; CI 95% = 0.676-0.778). The results were validated by the INMA cohort (OR per allele = 1.23 CI 95% = 1.03-1.48 and AUC = 0.601 CI 95% = 0.522-0.680). The use of our proposed genetic score provides useful information to determine those children who are susceptible to obesity. To improve the efficiency of clinical prevention and treatment of obesity, it is essential to design individualized based protocols in advance knowledge of the molecular basis of inherited susceptibility. Show less